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Crystal structure of ligo-apo form from sphingobium sp. strain syk-6

Analyse Crystal structure of ligo-apo form from sphingobium sp. strain syk-6 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4YA6
Type: protein
Length: 270 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: C alpha-dehydrogenase
UniProt: C0SUK3
Pockets: 1 · best druggability 0.56

Structure

x-ray diffraction · 1 distinct chain · 57% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	C alpha-dehydrogenase	protein	270	57% helix, 13% strand	C0SUK3

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	249	0.56	0.77	36	empty

Compared structures

4YA6 · Crystal structure of LigO-apo form from Sphingobium sp. strain SYK-6 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C0SUK3
Elsewhere: RCSB PDB 4YA6 · PDBe 4YA6 · UniProt C0SUK3

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