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Crystal structure of an ABC transporter solute binding protein (IPR025997) from agrobacterium vitis S4 (AVI_5305, target efi-511224) with bound alpha-D-glucosamine

Analyse Crystal structure of an ABC transporter solute binding protein (IPR025997) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4Y9T
Type: protein
Length: 321 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: ABC transporter, solute binding protein
UniProt: B9K0Q5
Ligands: PA1
Pockets: 2 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 40% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	ABC transporter, solute binding protein	protein	321	40% helix, 22% strand	B9K0Q5

Ligands and binding sites

PA1 · 2-amino-2-deoxy-alpha-D-glucopyranose · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	55	0.61	0.92	19	PA1
2	54	0.38	0.80	16	empty

Modifications

Observed in the structure: 10 modified (engineered).

Compared structures

4Y9T · CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SOLUTE BINDING PROTEIN (IPR025997) FROM… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B9K0Q5
Elsewhere: RCSB PDB 4Y9T · PDBe 4Y9T · UniProt B9K0Q5

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