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Factor xia in complex with the inhibitor methyl (4-{4-chloro-2-[(1S)- 1-({(2E)-3-[5-chloro-2-(1H-tetrazol-1-YL)PHENYL]PROP-2-ENOYL}AMINO)- 2-phenylethyl]-1H-imidazol-5-YL}PHENYL)CARBAMATE

Analyse Factor xia in complex with the inhibitor methyl (4-{4-chloro-2-[(1S)… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
4Y8X
Type
protein
Length
238 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Coagulation factor xia
EC
3.4.21.27
UniProt
P03951
Ligands
4GR, SO4
Pockets
2 · best druggability 0.45

Structure

x-ray diffraction · 1 distinct chain · 16% helix, 34% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ACoagulation factor xia (EC 3.4.21.27)protein23816% helix, 34% strandP03951

Ligands and binding sites

  • 4GR · methyl (4-{4-chloro-2-[(1S)-1-({(2E)-3-[5-chloro-2-(1H-tetrazol-1-yl)phenyl]prop-2-enoyl}amino)-2-phenylethyl]-1H-imidazol-5-yl}phenyl)carbamate · ligand · chains A
  • SO4 · Sulfate ion · ion · 2 copies · chains A
  • EDO · 1,2-ethanediol · additive · 9 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
11410.450.76254GR, EDO
21090.400.7619empty

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

  • 4Y8X · Factor XIa in complex with the inhibitor methyl… · the same entry in another collection · chain A against A, TM-score 1.00
  • P03951 · AlphaFold monomer V2.0 prediction for coagulation factor XI (P03951) · a predicted model of the same protein · chain A against A, TM-score 0.98

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