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Crystal structure of yellow lupine llpr-10.1A protein in ligand-free form

Analyse Crystal structure of yellow lupine llpr-10.1A protein in ligand-free form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4Y31
Type: protein
Length: 150 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein LLR18A
UniProt: P52778
Pockets: 1 · best druggability 0.66

Structure

x-ray diffraction · 1 distinct chain · 25% helix, 45% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein LLR18A	protein	150	25% helix, 45% strand	P52778

Ligands and binding sites

ACT · Acetate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	344	0.66	0.80	52	empty

Compared structures

4Y31 · Crystal structure of yellow lupine LlPR-10.1A protein in ligand-free form · the same entry in another collection · chain A against A, TM-score 1.00
P52778 · AlphaFold monomer V2.0 prediction for protein LLR18A (P52778) · a predicted model of the same protein · chain A against A, TM-score 0.92

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P52778
Elsewhere: RCSB PDB 4Y31 · PDBe 4Y31 · UniProt P52778

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