Research workbench
CD3 epsilon and gamma ectodomain fragment complex in single-chain construct
Analyse CD3 epsilon and gamma ectodomain fragment complex in single-chain construct in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1JBJ
- Type
- protein
- Length
- 186 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- CD3 epsilon and gamma ectodomain fragment complex
- UniProt
- P22646, P11942
- Pockets
- 3 · best druggability 0.67
Structure
solution nmr · 1 distinct chain · 0% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | CD3 epsilon and gamma ectodomain fragment complex | protein | 186 | 0% helix, 35% strand | P22646, P11942 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 491 | 0.67 | 0.78 | 49 | empty |
| 2 | 88 | 0.35 | 0.75 | 18 | empty |
| 3 | 75 | 0.31 | 0.74 | 20 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 1JBJ · CD3 Epsilon and gamma Ectodomain Fragment Complex in Single-Chain Construct · the same entry in another collection · chain A against A, TM-score 1.00
- P22646 · AlphaFold monomer V2.0 prediction for T-cell surface glycoprotein CD3 epsilon chain… · a predicted model of the same protein · chain A against A, TM-score 0.40
- P11942 · AlphaFold monomer V2.0 prediction for T-cell surface glycoprotein CD3 gamma chain (P11942) · a predicted model of the same protein · chain A against A, TM-score 0.37
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P22646
- Every structure of UniProt P11942
- Elsewhere: RCSB PDB 1JBJ · PDBe 1JBJ · UniProt P22646 · UniProt P11942
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