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Bacterial polysaccharide outer membrane secretin

Analyse Bacterial polysaccharide outer membrane secretin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4Y25
Type: protein
Length: 290 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Poly-beta-1,6-N-acetyl-D-glucosamine export protein
UniProt: P69434
Pockets: 4 · best druggability 0.71

Structure

x-ray diffraction · 1 distinct chain · 1% helix, 70% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Poly-beta-1,6-N-acetyl-D-glucosamine export protein	protein	290	1% helix, 70% strand	P69434

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	730	0.71	0.78	69	empty
2	249	0.61	0.81	40	empty
3	58	0.47	0.85	13	empty
4	87	0.34	0.75	15	empty

Compared structures

4Y25 · Bacterial polysaccharide outer membrane secretin · the same entry in another collection · chain A against A, TM-score 1.00
P69434 · AlphaFold monomer V2.0 prediction for poly-beta-1,6-N-acetyl-D- glucosamine export… · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P69434
Elsewhere: RCSB PDB 4Y25 · PDBe 4Y25 · UniProt P69434

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