Research workbench
Crystal structure of the S/T protein kinase pkng from mycobacterium tuberculosis in complex with ags
Analyse Crystal structure of the S/T protein kinase pkng from mycobacterium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4Y12
- Type
- protein
- Length
- 322 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SERINE/THREONINE-protein kinase pkng
- EC
- 2.7.11.1
- UniProt
- P9WI73
- Ligands
- AGS, MG, ZN
- Pockets
- 3 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | SERINE/THREONINE-protein kinase pkng (EC 2.7.11.1) | protein | 322 | 32% helix, 21% strand | P9WI73 |
Ligands and binding sites
- AGS · Phosphothiophosphoric acid-adenylate ester · ligand · chains A
- MG · Magnesium ion · metal · 2 copies · chains A
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 289 | 0.69 | 0.84 | 36 | empty |
| 2 | 456 | 0.66 | 0.78 | 44 | AGS, MG |
| 3 | 50 | 0.32 | 0.77 | 14 | empty |
Compared structures
- 4Y12 · Crystal structure of the S/T protein kinase PknG from Mycobacterium tuberculosis in… · the same entry in another collection · chain A against A, TM-score 1.00
- P9WI73 · AlphaFold monomer V2.0 prediction for SERINE/THREONINE-protein kinase pkng (P9WI73) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P9WI73
- Elsewhere: RCSB PDB 4Y12 · PDBe 4Y12 · UniProt P9WI73
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.