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The crystal structure of kupe virus nucleoprotein
Analyse The crystal structure of kupe virus nucleoprotein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4XZC
- Type
- protein
- Length
- 933 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nucleoprotein
- UniProt
- B8PWH3
- Pockets
- 7 · best druggability 0.82
Structure
x-ray diffraction · 2 distinct chains · 59% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleoprotein | protein | 468 | 60% helix, 4% strand | B8PWH3 |
| B | Nucleoprotein | protein | 465 | 58% helix, 2% strand | B8PWH3 |
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 994 | 0.82 | 0.83 | 73 | empty |
| 2 | 933 | 0.79 | 0.81 | 70 | empty |
| 3 | 172 | 0.48 | 0.77 | 27 | empty |
| 4 | 194 | 0.48 | 0.75 | 22 | empty |
| 5 | 154 | 0.48 | 0.77 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 51 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 4XZC · The crystal structure of Kupe virus nucleoprotein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B8PWH3
- Elsewhere: RCSB PDB 4XZC · PDBe 4XZC · UniProt B8PWH3
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