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The crystal structure of erve virus nucleoprotein
Analyse The crystal structure of erve virus nucleoprotein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4XZ8
- Type
- protein
- Length
- 946 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nucleoprotein
- UniProt
- J3S7E7
- Pockets
- 11 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 56% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Nucleoprotein | protein | 473 | 56% helix, 4% strand | J3S7E7 |
Pockets
11 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 991 | 0.81 | 0.83 | 82 | empty |
| 2 | 516 | 0.76 | 0.84 | 72 | empty |
| 3 | 498 | 0.75 | 0.83 | 61 | empty |
| 4 | 177 | 0.69 | 0.88 | 30 | empty |
| 5 | 188 | 0.65 | 0.85 | 31 | empty |
Interfaces
1 interface between chains.
- A–B · 663 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 4XZ8 · The crystal structure of Erve virus nucleoprotein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt J3S7E7
- Elsewhere: RCSB PDB 4XZ8 · PDBe 4XZ8 · UniProt J3S7E7
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