Research workbench

Ychf protein (HI0393)

Analyse Ychf protein (HI0393) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1JAL
Type: protein
Length: 683 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ychf protein
UniProt: P44681
Pockets: 9 · best druggability 0.63

Structure

x-ray diffraction · 2 distinct chains · 44% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ychf protein	protein	348	44% helix, 19% strand	P44681
B	Ychf protein	protein	335	44% helix, 19% strand	P44681

Pockets

9 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	519	0.63	0.76	44	empty
2	212	0.51	0.76	31	empty
3	126	0.38	0.74	18	empty
4	94	0.37	0.75	24	empty
5	60	0.36	0.78	16	empty

Interfaces

1 interface between chains.

A–B · 349 Å² buried · 1 hydrogen bond · protein-protein

Compared structures

1JAL · Ychf protein (HI0393) · the same entry in another collection · chain A against A, TM-score 1.00
P44681 · AlphaFold monomer V2.0 prediction for ribosome-binding ATPase ychf (P44681) · a predicted model of the same protein · chain B against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P44681
Elsewhere: RCSB PDB 1JAL · PDBe 1JAL · UniProt P44681

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