Research workbench
Crystal structure of ego-tc
Analyse Crystal structure of ego-tc in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4XPM
- Type
- protein
- Length
- 249 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein MEH1; Uncharacterized protein YCR075W-a; Protein SLM4
- UniProt
- Q02205, Q3E830, P38247
- Pockets
- 1 · best druggability 0.46
Structure
x-ray diffraction · 3 distinct chains · 30% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein MEH1 | protein | 39 | 46% helix, 5% strand | Q02205 |
| B | Uncharacterized protein YCR075W-a | protein | 67 | 16% helix, 49% strand | Q3E830 |
| C | Protein SLM4 | protein | 143 | 31% helix, 34% strand | P38247 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 131 | 0.46 | 0.77 | 19 | empty |
Interfaces
3 interfaces between chains.
- A–C · 1106 Ų buried · 18 hydrogen bonds · protein-protein
- A–B · 758 Ų buried · 3 hydrogen bonds · protein-protein
- B–C · 425 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 4XPM · Crystal structure of EGO-TC · the same entry in another collection · chain A against A, TM-score 1.00
- P38247 · AlphaFold monomer V2.0 prediction for protein SLM4 (P38247) · a predicted model of the same protein · chain C against A, TM-score 0.96
- Q3E830 · AlphaFold monomer V2.0 prediction for uncharacterized protein YCR075W-a (Q3E830) · a predicted model of the same protein · chain B against A, TM-score 0.95
- Q02205 · AlphaFold monomer V2.0 prediction for protein MEH1 (Q02205) · a predicted model of the same protein · chain A against A, TM-score 0.76
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q02205
- Every structure of UniProt Q3E830
- Every structure of UniProt P38247
- Elsewhere: RCSB PDB 4XPM · PDBe 4XPM · UniProt Q02205 · UniProt Q3E830 · UniProt P38247
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