Research workbench
Binding of N-acetylglucosamine to chicken egg lysozyme: a powder diffraction study
Analyse Binding of N-acetylglucosamine to chicken egg lysozyme: a powder diffraction… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1JA4
- Type
- protein
- Length
- 129 residues
- Chains
- 1
- Method
- powder diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lysozyme
- EC
- 3.2.1.17
- UniProt
- P00698
- Pockets
- 3 · best druggability 0.74
Structure
powder diffraction · 1 distinct chain · 14% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lysozyme (EC 3.2.1.17) | protein | 129 | 14% helix, 9% strand | P00698 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 167 | 0.74 | 0.91 | 34 | empty |
| 2 | 70 | 0.50 | 0.84 | 18 | empty |
| 3 | 107 | 0.47 | 0.79 | 25 | empty |
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 1JA4 · Binding of N-acetylglucosamine to chicken egg lysozyme: a powder diffraction study · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00698
- Elsewhere: RCSB PDB 1JA4 · PDBe 1JA4 · UniProt P00698
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