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Crystal structure of human thioesterase 2

Analyse Crystal structure of human thioesterase 2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
4XJV
Type
protein
Length
216 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
S-acyl fatty acid synthase thioesterase, medium chain
EC
3.1.2.14
UniProt
Q9NV23
Ligands
CL
Pockets
1 · best druggability 0.62

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 16% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AS-acyl fatty acid synthase thioesterase, medium chain (EC 3.1.2.14)protein21638% helix, 16% strandQ9NV23

Ligands and binding sites

  • CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
12380.620.8124CL

Compared structures

  • 4XJV · Crystal structure of human thioesterase 2 · the same entry in another collection · chain A against A, TM-score 1.00
  • Q9NV23 · AlphaFold monomer V2.0 prediction for S-acyl fatty acid synthase thioesterase, medium… · a predicted model of the same protein · chain A against A, TM-score 0.96

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