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Signal recognition particle conserved GTPase domain from a. ambivalens T112A mutant

Analyse Signal recognition particle conserved GTPase domain from a. ambivalens T112A… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1J8Y
Type: protein
Length: 291 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Signal recognition 54 kda protein
UniProt: P70722
Pockets: 4 · best druggability 0.68

Structure

x-ray diffraction · 1 distinct chain · 51% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
F	Signal recognition 54 kda protein	protein	291	51% helix, 13% strand	P70722

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	237	0.68	0.85	33	empty
2	113	0.45	0.78	21	empty
3	59	0.36	0.78	10	empty
4	77	0.32	0.74	17	empty

Compared structures

1J8Y · Signal Recognition Particle conserved GTPase domain from A. ambivalens T112A mutant · the same entry in another collection · chain F against F, TM-score 1.00
P70722 · AlphaFold monomer V2.0 prediction for signal recognition particle 54 kda protein (P70722) · a predicted model of the same protein · chain F against A, TM-score 0.84

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P70722
Elsewhere: RCSB PDB 1J8Y · PDBe 1J8Y · UniProt P70722

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