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Fatty acid and retinol binding protein na-far-1 from necator americanus

Analyse Fatty acid and retinol binding protein na-far-1 from necator americanus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4XCP
Type: protein
Length: 155 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Nematode fatty acid retinoid binding protein
UniProt: W2SRJ3
Ligands: PLM
Pockets: 1 · best druggability 0.85

Structure

x-ray diffraction · 1 distinct chain · 78% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Nematode fatty acid retinoid binding protein	protein	155	78% helix, 0% strand	W2SRJ3

Ligands and binding sites

PLM · Palmitic acid · ligand · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	933	0.85	0.85	61	PLM

Modifications

Observed in the structure: 4 modified (engineered).

Compared structures

4XCP · Fatty Acid and Retinol binding protein Na-FAR-1 from Necator americanus · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt W2SRJ3
Elsewhere: RCSB PDB 4XCP · PDBe 4XCP · UniProt W2SRJ3

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