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Crystal structure of an ABC transporter solute binding protein (IPR025997) from clostridium phytofermentas (CPHY_0583, target efi- 511148) with bound L-rhamnose
Analyse Crystal structure of an ABC transporter solute binding protein (IPR025997) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4WZZ
- Type
- protein
- Length
- 321 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative sugar ABC transporter, substrate-binding protein
- UniProt
- A9KIX1
- Ligands
- RAM
- Pockets
- 2 · best druggability 0.44
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative sugar ABC transporter, substrate-binding protein | protein | 321 | 40% helix, 21% strand | A9KIX1 |
Ligands and binding sites
- RAM · alpha-L-rhamnopyranose · sugar · chains A
- EDO · 1,2-ethanediol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 95 | 0.44 | 0.79 | 22 | EDO |
| 2 | 53 | 0.30 | 0.75 | 13 | EDO |
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 4WZZ · CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SOLUTE BINDING PROTEIN (IPR025997) FROM… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A9KIX1
- Elsewhere: RCSB PDB 4WZZ · PDBe 4WZZ · UniProt A9KIX1
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