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Structural analysis of C. acetobutylicum atcc 824 glycoside hydrolase from family 105
Analyse Structural analysis of C. acetobutylicum atcc 824 glycoside hydrolase from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4WU0
- Type
- protein
- Length
- 720 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Similar to yter (bacilus subtilis)
- UniProt
- Q97M41
- Pockets
- 7 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 56% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Similar to yter (bacilus subtilis) | protein | 360 | 56% helix, 9% strand | Q97M41 |
Pockets
7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 387 | 0.65 | 0.79 | 30 | empty |
| 2 | 273 | 0.62 | 0.80 | 28 | empty |
| 3 | 201 | 0.60 | 0.81 | 23 | empty |
| 4 | 317 | 0.52 | 0.74 | 27 | empty |
| 5 | 267 | 0.49 | 0.74 | 29 | empty |
Interfaces
1 interface between chains.
- A–B · 902 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 4WU0 · Structural Analysis of C. acetobutylicum ATCC 824 Glycoside Hydrolase From Family 105 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q97M41
- Elsewhere: RCSB PDB 4WU0 · PDBe 4WU0 · UniProt Q97M41
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