Research workbench
The C-terminal domain of rubisco accumulation factor 1 from arabidopsis thaliana, crystal form II
Analyse The C-terminal domain of rubisco accumulation factor 1 from arabidopsis… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4WT5
- Type
- protein
- Length
- 300 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Rubisco accumulation factor 1, isoform 2
- UniProt
- Q9SR19
- Pockets
- 4 · best druggability 0.59
Structure
x-ray diffraction · 2 distinct chains · 17% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Rubisco accumulation factor 1, isoform 2 | protein | 149 | 14% helix, 40% strand | Q9SR19 |
| B | Rubisco accumulation factor 1, isoform 2 | protein | 151 | 19% helix, 36% strand | Q9SR19 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 160 | 0.59 | 0.83 | 35 | empty |
| 2 | 70 | 0.46 | 0.82 | 20 | empty |
| 3 | 81 | 0.43 | 0.80 | 15 | empty |
| 4 | 76 | 0.40 | 0.79 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 1402 Ų buried · 16 hydrogen bonds · protein-protein
Compared structures
- 4WT5 · The C-terminal domain of Rubisco Accumulation Factor 1 from Arabidopsis thaliana, crystal… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9SR19 · AlphaFold monomer V2.0 prediction for rubisco accumulation factor 1.2, chloroplastic… · a predicted model of the same protein · chain A against A, TM-score 0.83
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9SR19
- Elsewhere: RCSB PDB 4WT5 · PDBe 4WT5 · UniProt Q9SR19
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