Research workbench
Crystal structure of frutalin from artocarpus incisa
Analyse Crystal structure of frutalin from artocarpus incisa in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4WOG
- Type
- protein
- Length
- 602 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Frutalin
- Pockets
- 5 · best druggability 0.84
Structure
x-ray diffraction · 2 distinct chains · 0% helix, 64% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, D | Frutalin | protein | 150 | 0% helix, 64% strand | — |
| B | Frutalin | protein | 152 | 0% helix, 63% strand | — |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 466 | 0.84 | 0.91 | 61 | empty |
| 2 | 78 | 0.32 | 0.74 | 17 | empty |
| 3 | 68 | 0.30 | 0.74 | 22 | empty |
| 4 | 64 | 0.29 | 0.74 | 17 | empty |
| 5 | 67 | 0.29 | 0.73 | 20 | empty |
Interfaces
6 interfaces between chains.
- B–C · 1120 Ų buried · 23 hydrogen bonds · protein-protein
- C–D · 986 Ų buried · 21 hydrogen bonds · protein-protein
- A–B · 982 Ų buried · 21 hydrogen bonds · protein-protein
- A–D · 896 Ų buried · 19 hydrogen bonds · protein-protein
- B–D · 84 Ų buried · 0 hydrogen bonds · protein-protein
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4WOG · PDBe 4WOG
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