Research workbench
Complex of the KH3 domain of hnrnp K with a SINGLE_STRANDED 10MER DNA oligonucleotide
Analyse Complex of the KH3 domain of hnrnp K with a SINGLE_STRANDED 10MER DNA… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1J5K
- Type
- protein + DNA
- Length
- 81 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*AP*TP*AP*T*TP*CP*CP*CP*TP*C)-3'; Heterogeneous nuclear ribonucleoprotein K
- UniProt
- P61978
Structure
solution nmr · 2 distinct chains · 50% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | 5'-D(*AP*TP*AP*T*TP*CP*CP*CP*TP*C)-3' | dna | 5 | — | — |
| A | Heterogeneous nuclear ribonucleoprotein K | protein | 76 | 50% helix, 29% strand | P61978 |
Interfaces
1 interface between chains.
- B–A · 577 Ų buried · 13 hydrogen bonds · protein-nucleic
Compared structures
- 1J5K · Complex of the KH3 domain of hnrnp K with a SINGLE_STRANDED 10MER DNA oligonucleotide · the same entry in another collection · chain B against B, TM-score 1.00
- P61978 · AlphaFold monomer V2.0 prediction for heterogeneous nuclear ribonucleoprotein K (P61978) · a predicted model of the same protein · chain A against A, TM-score 0.89
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P61978
- Elsewhere: RCSB PDB 1J5K · PDBe 1J5K · UniProt P61978
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