Stationary phase survival protein yuic from B.SUBTILIS complexed with reaction product

Structure

x-ray diffraction · 2 distinct chains · 23% helix, 29% strand (DSSP).

Ligands and binding sites

• 3QL · N-[(1R,2S,3R,4R,5R)-2-[(2S,3R,4R,5S,6R)-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-6,8-dioxabicyclo[3.2.1]octan-4-yl]ethanamide · ligand · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Interfaces

1 interface between chains.

• A–B · 4054 Ų buried · 58 hydrogen bonds · protein-protein

Compared structures

• 4WLK · Stationary Phase Survival Protein YuiC from B.subtilis complexed with reaction product · the same entry in another collection · chain A against A, TM-score 1.00
• O32108 · AlphaFold monomer V2.0 prediction for uncharacterized protein yuic (O32108) · a predicted model of the same protein · chain A against A, TM-score 0.72

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt O32108
• Elsewhere: RCSB PDB 4WLK · PDBe 4WLK · UniProt O32108