Research workbench
Structure of wzze polysaccharide co-polymerase
Analyse Structure of wzze polysaccharide co-polymerase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4WL1
- Type
- protein
- Length
- 7,072 residues
- Chains
- 32
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lipopolysaccharide biosynthesis protein wzze
- UniProt
- P0AG01
- Pockets
- 20 · best druggability 0.84
Structure
x-ray diffraction · 1 distinct chain · 63% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b, c, d, e, f | Lipopolysaccharide biosynthesis protein wzze | protein | 221 | 63% helix, 11% strand | P0AG01 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 976 | 0.84 | 0.85 | 105 | empty |
| 2 | 709 | 0.83 | 0.86 | 68 | empty |
| 3 | 1054 | 0.75 | 0.78 | 91 | empty |
| 4 | 1130 | 0.75 | 0.77 | 83 | empty |
| 5 | 986 | 0.74 | 0.77 | 98 | empty |
Interfaces
43 interfaces between chains.
- c–d · 1378 Ų buried · 18 hydrogen bonds · protein-protein
- U–V · 1371 Ų buried · 15 hydrogen bonds · protein-protein
- a–b · 1323 Ų buried · 21 hydrogen bonds · protein-protein
- M–N · 1306 Ų buried · 18 hydrogen bonds · protein-protein
- e–f · 1306 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 4WL1 · Structure of WzzE Polysaccharide Co-polymerase · the same entry in another collection · chain c against c, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AG01
- Elsewhere: RCSB PDB 4WL1 · PDBe 4WL1 · UniProt P0AG01
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