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Crystal structure of cytochrome C' from alcaligenes xylosoxidans ncimb 11015 at pH 6.0

Analyse Crystal structure of cytochrome C' from alcaligenes xylosoxidans ncimb 11015 at… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4WGZ
Type: protein
Length: 126 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytochrome C'
UniProt: P00138
Ligands: HEC
Pockets: 1 · best druggability 0.64

Structure

x-ray diffraction · 1 distinct chain · 73% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytochrome C'	protein	126	73% helix, 2% strand	P00138

Ligands and binding sites

HEC · Heme C · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	184	0.64	0.84	30	HEC

Modifications

Observed in the structure: 2 cofactor, 1 modified (heme c attachment, cyclization).

Compared structures

4WGZ · Crystal Structure of Cytochrome c' from Alcaligenes xylosoxidans NCIMB 11015 at pH 6.0 · the same entry in another collection · chain A against A, TM-score 1.00
P00138 · AlphaFold monomer V2.0 prediction for cytochrome C' (P00138) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00138
Elsewhere: RCSB PDB 4WGZ · PDBe 4WGZ · UniProt P00138

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