Research workbench
Complex of the KH3 and KH4 domains of fbp with a SINGLE_STRANDED 29MER DNA oligonucleotide from the fuse element of the C-myc oncogene
Analyse Complex of the KH3 and KH4 domains of fbp with a SINGLE_STRANDED 29MER DNA… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1J4W
- Type
- protein + DNA
- Length
- 160 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'- D(*GP*TP*A*TP*AP*TP*TP*CP*CP*CP*TP*CP*GP*GP*G*AP*TP*TP*TP*TP*TP*TP*AP…
- UniProt
- Q96AE4
Structure
solution nmr · 2 distinct chains · 49% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | DNA (5'- D(*GP*TP*A*TP*AP*TP*TP*CP*CP*CP*TP*CP*GP*GP*G*AP*TP*TP*TP*TP*TP*TP*AP *TP*TP*TP*TP*GP*T)-3') | dna | 15 | — | — |
| A | Fuse binding protein | protein | 145 | 49% helix, 28% strand | Q96AE4 |
Interfaces
1 interface between chains.
- B–A · 971 Ų buried · 9 hydrogen bonds · protein-nucleic
Compared structures
- 1J4W · COMPLEX OF THE KH3 and KH4 DOMAINS OF FBP WITH A SINGLE_STRANDED 29mer DNA… · the same entry in another collection · chain B against B, TM-score 1.00
- Q96AE4 · AlphaFold monomer V2.0 prediction for far upstream element-binding protein 1 (Q96AE4) · a predicted model of the same protein · chain A against A, TM-score 0.52
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q96AE4
- Elsewhere: RCSB PDB 1J4W · PDBe 1J4W · UniProt Q96AE4
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