Research workbench
Crystal structure of tarm
Analyse Crystal structure of tarm in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4WAC
- Type
- protein
- Length
- 498 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glycosyl transferase, group 1 family protein
- EC
- 2.4.1.5, 2.4.1.52
- UniProt
- Q2FI41
- Pockets
- 2 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glycosyl transferase, group 1 family protein (EC 2.4.1.5, 2.4.1.52) | protein | 498 | 34% helix, 27% strand | Q2FI41 |
Ligands and binding sites
- ACT · Acetate ion · additive · 2 copies · chains A
- EDO · 1,2-ethanediol · additive · 2 copies · chains A
- IMD · Imidazole · additive · chains A
- PEG · Di(hydroxyethyl)ether · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1069 | 0.76 | 0.78 | 78 | empty |
| 2 | 82 | 0.44 | 0.81 | 20 | empty |
Compared structures
- 4WAC · Crystal Structure of TarM · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2FI41
- Elsewhere: RCSB PDB 4WAC · PDBe 4WAC · UniProt Q2FI41
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