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Acinetobacter baumannii sdf ndk

Analyse Acinetobacter baumannii sdf ndk in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4W98
Type: protein
Length: 145 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Nucleoside diphosphate kinase
EC: 2.7.4.6
UniProt: B0VKS3
Pockets: 1 · best druggability 0.46

Structure

x-ray diffraction · 1 distinct chain · 42% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Nucleoside diphosphate kinase (EC 2.7.4.6)	protein	145	42% helix, 21% strand	B0VKS3

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	201	0.46	0.74	27	empty

Compared structures

4W98 · Acinetobacter baumannii SDF NDK · the same entry in another collection · chain A against A, TM-score 1.00
B0VKS3 · AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase (B0VKS3) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B0VKS3
Elsewhere: RCSB PDB 4W98 · PDBe 4W98 · UniProt B0VKS3

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