Research workbench
JNK2/3 in complex with 3-(4-{[(2-CHLOROPHENYL)CARBAMOYL]AMINO}-1H- pyrazol-1-yl)-N-(2-methylpyridin-4-YL)BENZAMIDE
Analyse JNK2/3 in complex with 3-(4-{[(2-CHLOROPHENYL)CARBAMOYL]AMINO}-1H… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4W4V
- Type
- protein
- Length
- 342 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- C-jun N-terminal kinase 3
- EC
- 2.7.11.24
- UniProt
- P53779
- Ligands
- 3H8
- Pockets
- 3 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | C-jun N-terminal kinase 3 (EC 2.7.11.24) | protein | 342 | 39% helix, 15% strand | P53779 |
Ligands and binding sites
- 3H8 · 3-(4-{[(2-chlorophenyl)carbamoyl]amino}-1H-pyrazol-1-yl)-N-(2-methylpyridin-4-yl)benzamide · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 713 | 0.78 | 0.82 | 73 | 3H8 |
| 2 | 105 | 0.39 | 0.76 | 16 | empty |
| 3 | 75 | 0.33 | 0.75 | 15 | empty |
Compared structures
- 4W4V · JNK2/3 in complex with 3-(4-{[(2-chlorophenyl)carbamoyl]amino}-1H-pyrazol-1-yl)-N-(2-methy… · the same entry in another collection · chain A against A, TM-score 1.00
- P53779 · AlphaFold monomer V2.0 prediction for mitogen-activated protein kinase 10 (P53779) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P53779
- Elsewhere: RCSB PDB 4W4V · PDBe 4W4V · UniProt P53779
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