Research workbench
Designed armadillo repeat protein with 5 internal repeats, 2ND generation C-cap and 3RD generation N-cap.
Analyse Designed armadillo repeat protein with 5 internal repeats, 2ND generation C-cap… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4V3R
- Type
- protein
- Length
- 562 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- YIII_M5_AII
- Ligands
- MG
- Pockets
- 3 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 76% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | YIII_M5_AII | protein | 281 | 76% helix, 0% strand | — |
Ligands and binding sites
- MG · Magnesium ion · metal · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 709 | 0.73 | 0.80 | 100 | MG |
| 2 | 227 | 0.47 | 0.74 | 40 | empty |
| 3 | 67 | 0.30 | 0.74 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 674 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 4V3R · Designed armadillo repeat protein with 5 internal repeats, 2nd generation C-cap and 3rd… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4V3R · PDBe 4V3R
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.