Research workbench
Apo-structure of ALPHA2,3-sialyltransferase variant 1 from pasteurella dagmatis
Analyse Apo-structure of ALPHA2,3-sialyltransferase variant 1 from pasteurella dagmatis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4V38
- Type
- protein
- Length
- 388 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sialyltransferase
- UniProt
- K9UUI6
- Pockets
- 4 · best druggability 0.53
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sialyltransferase | protein | 388 | 41% helix, 19% strand | K9UUI6 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 263 | 0.53 | 0.76 | 41 | empty |
| 2 | 83 | 0.43 | 0.79 | 14 | empty |
| 3 | 52 | 0.43 | 0.83 | 14 | empty |
| 4 | 63 | 0.32 | 0.76 | 17 | empty |
Compared structures
- 4V38 · Apo-structure of alpha2,3-sialyltransferase variant 1 from Pasteurella dagmatis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt K9UUI6
- Elsewhere: RCSB PDB 4V38 · PDBe 4V38 · UniProt K9UUI6
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