Research workbench
Ironing out their differences: dissecting the structural determinants of a phenylalanine aminomutase and ammonia lyase
Analyse Ironing out their differences: dissecting the structural determinants of a… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4V2R
- Type
- protein
- Length
- 1,231 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phenylalanine aminomutase (L-beta-phenylalanine forming)
- EC
- 5.4.3.10, 4.3.1.24
- UniProt
- Q68G84
- Pockets
- 8 · best druggability 0.62
Structure
x-ray diffraction · 2 distinct chains · 65% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phenylalanine aminomutase (L-beta-phenylalanine forming) (EC 5.4.3.10, 4.3.1.24) | protein | 613 | 66% helix, 4% strand | Q68G84 |
| B | Phenylalanine aminomutase (L-beta-phenylalanine forming) (EC 5.4.3.10, 4.3.1.24) | protein | 618 | 64% helix, 4% strand | Q68G84 |
Pockets
8 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 124 | 0.62 | 0.86 | 19 | empty |
| 2 | 202 | 0.60 | 0.82 | 34 | empty |
| 3 | 163 | 0.54 | 0.80 | 27 | empty |
| 4 | 117 | 0.51 | 0.81 | 34 | empty |
| 5 | 152 | 0.41 | 0.73 | 27 | empty |
Interfaces
1 interface between chains.
- A–B · 3467 Ų buried · 48 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 modified (nonstandard).
Compared structures
- 4V2R · Ironing out their differences: Dissecting the structural determinants of a phenylalanine… · the same entry in another collection · chain B against B, TM-score 1.00
- Q68G84 · AlphaFold monomer V2.0 prediction for phenylalanine aminomutase (L-beta-phenylalanine… · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q68G84
- Elsewhere: RCSB PDB 4V2R · PDBe 4V2R · UniProt Q68G84
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.