Research workbench
Ironing out their differences: dissecting the structural determinants of a phenylalanine aminomutase and ammonia lyase
Analyse Ironing out their differences: dissecting the structural determinants of a… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4V2Q
- Type
- protein
- Length
- 1,234 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phenylalanine ammonia-lyase
- EC
- 4.3.1.24
- UniProt
- Q68G84
- Pockets
- 7 · best druggability 0.65
Structure
x-ray diffraction · 2 distinct chains · 65% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phenylalanine ammonia-lyase (EC 4.3.1.24) | protein | 613 | 66% helix, 5% strand | Q68G84 |
| B | Phenylalanine ammonia-lyase (EC 4.3.1.24) | protein | 621 | 65% helix, 5% strand | Q68G84 |
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 296 | 0.65 | 0.81 | 50 | empty |
| 2 | 180 | 0.61 | 0.83 | 30 | empty |
| 3 | 53 | 0.48 | 0.86 | 16 | empty |
| 4 | 129 | 0.44 | 0.77 | 21 | empty |
| 5 | 194 | 0.44 | 0.73 | 31 | empty |
Interfaces
1 interface between chains.
- A–B · 3454 Ų buried · 48 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 modified (nonstandard).
Compared structures
- 4V2Q · Ironing out their differences: Dissecting the structural determinants of a phenylalanine… · the same entry in another collection · chain B against B, TM-score 1.00
- Q68G84 · AlphaFold monomer V2.0 prediction for phenylalanine aminomutase (L-beta-phenylalanine… · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q68G84
- Elsewhere: RCSB PDB 4V2Q · PDBe 4V2Q · UniProt Q68G84
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