Research workbench
The 3-D structure of the cellobiohydrolase, CEL7A, from aspergillus fumigatus
Analyse The 3-D structure of the cellobiohydrolase, CEL7A, from aspergillus fumigatus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4V1Z
- Type
- protein
- Length
- 440 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cellobiohydrolase
- EC
- 3.2.1.91
- UniProt
- Q4WM08
- Ligands
- NAG, ZN
- Pockets
- 1 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 14% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cellobiohydrolase (EC 3.2.1.91) | protein | 440 | 14% helix, 35% strand | Q4WM08 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
- ZN · Zinc ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 885 | 0.81 | 0.83 | 84 | empty |
Modifications
Observed in the structure: 9 disulfide, 1 glycan, 1 modified (disulfide, N-glycosylation, cyclization).
Compared structures
- 4V1Z · The 3-D structure of the cellobiohydrolase, Cel7A, from Aspergillus fumigatus · the same entry in another collection · chain A against A, TM-score 1.00
- Q4WM08 · AlphaFold monomer V2.0 prediction for probable 1,4-beta-D-glucan cellobiohydrolase B… · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q4WM08
- Elsewhere: RCSB PDB 4V1Z · PDBe 4V1Z · UniProt Q4WM08
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