Research workbench
Structure of a novel carbohydrate binding module from glycoside hydrolase family 5 glucanase from ruminococcus flavefaciens fd-1 collected at the zn edge
Analyse Structure of a novel carbohydrate binding module from glycoside hydrolase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4V1B
- Type
- protein
- Length
- 300 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Carbohydrate binding module
- Pockets
- 3 · best druggability 0.69
Structure
x-ray diffraction · 2 distinct chains · 15% helix, 52% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Carbohydrate binding module | protein | 151 | 15% helix, 52% strand | — |
| B | Carbohydrate binding module | protein | 149 | 15% helix, 52% strand | — |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 56 | 0.69 | 0.97 | 20 | empty |
| 2 | 59 | 0.68 | 0.96 | 18 | empty |
| 3 | 80 | 0.48 | 0.83 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 1722 Ų buried · 19 hydrogen bonds · protein-protein
Compared structures
- 4V1B · Structure of a novel carbohydrate binding module from glycoside hydrolase family 5… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4V1B · PDBe 4V1B
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