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The semet structure of the family 46 carbohydrate-binding module (CBM46) of endo-beta-1,4-glucanase B (CEL5B) from bacillus halodurans
Analyse The semet structure of the family 46 carbohydrate-binding module (CBM46) of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4UZ8
- Type
- protein
- Length
- 213 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Endo-beta-1,4-glucanase (celulase B)
- UniProt
- Q9KF82
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.57
Structure
x-ray diffraction · 2 distinct chains · 8% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endo-beta-1,4-glucanase (celulase B) | protein | 107 | 7% helix, 49% strand | Q9KF82 |
| B | Endo-beta-1,4-glucanase (celulase B) | protein | 106 | 8% helix, 50% strand | Q9KF82 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 104 | 0.57 | 0.86 | 27 | empty |
Interfaces
1 interface between chains.
- A–B · 427 Ų buried · 1 hydrogen bond · protein-protein
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 4UZ8 · The SeMet structure of the family 46 carbohydrate-binding module (CBM46) of… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9KF82
- Elsewhere: RCSB PDB 4UZ8 · PDBe 4UZ8 · UniProt Q9KF82
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