Research workbench
Apo trichomonas vaginalis malate dehydrogenase
Analyse Apo trichomonas vaginalis malate dehydrogenase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4UUO
- Type
- protein
- Length
- 328 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytosolic malate dehydrogenase
- EC
- 1.1.1.37
- UniProt
- Q27819
- Pockets
- 3 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytosolic malate dehydrogenase (EC 1.1.1.37) | protein | 328 | 47% helix, 18% strand | Q27819 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 452 | 0.63 | 0.77 | 50 | empty |
| 2 | 123 | 0.41 | 0.75 | 24 | empty |
| 3 | 57 | 0.27 | 0.74 | 16 | empty |
Compared structures
- 4UUO · Apo Trichomonas vaginalis malate dehydrogenase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q27819
- Elsewhere: RCSB PDB 4UUO · PDBe 4UUO · UniProt Q27819
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.