Research workbench
Crystal structure of chitinase-like agglutinin robpscra from robinia pseudoacacia
Analyse Crystal structure of chitinase-like agglutinin robpscra from robinia… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4URI
- Type
- protein
- Length
- 673 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chitinase-related agglutinin
- UniProt
- A1YZD2
- Ligands
- NA, CL
- Pockets
- 2 · best druggability 0.79
Structure
x-ray diffraction · 2 distinct chains · 40% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Chitinase-related agglutinin | protein | 336 | 39% helix, 26% strand | A1YZD2 |
| B | Chitinase-related agglutinin | protein | 337 | 40% helix, 26% strand | A1YZD2 |
Ligands and binding sites
- NA · Sodium ion · metal · 3 copies · chains A
- CL · Chloride ion · ion · 2 copies · chains A, B
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · 6 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1143 | 0.79 | 0.81 | 100 | MPD |
| 2 | 115 | 0.48 | 0.79 | 24 | MPD |
Interfaces
1 interface between chains.
- A–B · 625 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 4URI · Crystal structure of chitinase-like agglutinin RobpsCRA from Robinia pseudoacacia · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A1YZD2
- Elsewhere: RCSB PDB 4URI · PDBe 4URI · UniProt A1YZD2
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.