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Structure of the type III fish antifreeze protein from zoarces viviparus ZVAFP6
Analyse Structure of the type III fish antifreeze protein from zoarces viviparus ZVAFP6 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4UR6
- Type
- protein
- Length
- 126 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Type III antifreeze protein 6
- UniProt
- R9S083
- Ligands
- SO4
Structure
x-ray diffraction · 2 distinct chains · 21% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Type III antifreeze protein 6 | protein | 64 | 20% helix, 25% strand | R9S083 |
| B | Type III antifreeze protein 6 | protein | 62 | 21% helix, 26% strand | R9S083 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 247 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 4UR6 · Structure of the type III fish antifreeze protein from Zoarces viviparus ZvAFP6 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt R9S083
- Elsewhere: RCSB PDB 4UR6 · PDBe 4UR6 · UniProt R9S083
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