Research workbench

Crystal structure of deinococcus radiodurans endonuclease III-1

Analyse Crystal structure of deinococcus radiodurans endonuclease III-1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4UNF
Type: protein
Length: 236 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Endonuclease III-1
EC: 4.2.99.18
UniProt: Q9RRQ0
Ligands: SF4, MG
Pockets: 2 · best druggability 0.43

Structure

x-ray diffraction · 1 distinct chain · 64% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Endonuclease III-1 (EC 4.2.99.18)	protein	236	64% helix, 0% strand	Q9RRQ0

Ligands and binding sites

SF4 · Iron/sulfur cluster · ligand · chains A
MG · Magnesium ion · metal · 2 copies · chains A
ACT · Acetate ion · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	159	0.43	0.75	23	empty
2	86	0.40	0.77	17	ACT

Compared structures

4UNF · Crystal structure of Deinococcus radiodurans Endonuclease III-1 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9RRQ0
Elsewhere: RCSB PDB 4UNF · PDBe 4UNF · UniProt Q9RRQ0

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.