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Crystal structure of ganglioside induced differentiation associated protein 2 (GDAP2) macro domain

Analyse Crystal structure of ganglioside induced differentiation associated protein 2… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4UML
Type: protein
Length: 201 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ganglioside-induced differentiation-associated protein 2
UniProt: Q9NXN4
Pockets: 1 · best druggability 0.44

Structure

x-ray diffraction · 1 distinct chain · 46% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ganglioside-induced differentiation-associated protein 2	protein	201	46% helix, 16% strand	Q9NXN4

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	103	0.44	0.78	20	empty

Compared structures

4UML · Crystal structure of ganglioside induced differentiation associated protein 2 (GDAP2)… · the same entry in another collection · chain A against A, TM-score 1.00
Q9NXN4 · AlphaFold monomer V2.0 prediction for ganglioside-induced differentiation-associated… · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

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Every structure of UniProt Q9NXN4
Elsewhere: RCSB PDB 4UML · PDBe 4UML · UniProt Q9NXN4

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