Research workbench
Solution structure of a tmrna-binding protein, smpb, from thermus thermophilus
Analyse Solution structure of a tmrna-binding protein, smpb, from thermus thermophilus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1J1H
- Type
- protein
- Length
- 123 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Small protein B
- UniProt
- Q8RR57
- Pockets
- 1 · best druggability 0.40
Structure
solution nmr · 1 distinct chain · 19% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Small protein B | protein | 123 | 19% helix, 20% strand | Q8RR57 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 51 | 0.40 | 0.81 | 21 | empty |
Compared structures
- 1J1H · Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus · the same entry in another collection · chain A against A, TM-score 1.00
- Q8RR57 · AlphaFold monomer V2.0 prediction for ssra-binding protein (Q8RR57) · a predicted model of the same protein · chain A against A, TM-score 0.66
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8RR57
- Elsewhere: RCSB PDB 1J1H · PDBe 1J1H · UniProt Q8RR57
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