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Structure of metal-free periplasmic metal binding protein from candidatus liberibacter asiaticus

Analyse Structure of metal-free periplasmic metal binding protein from candidatus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4UDN
Type: protein
Length: 266 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Periplasmic solute binding protein
UniProt: C6XF58
Ligands: SO4
Pockets: 3 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 45% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Periplasmic solute binding protein	protein	266	45% helix, 17% strand	C6XF58

Ligands and binding sites

SO4 · Sulfate ion · ion · 5 copies · chains A
GOL · Glycerol · additive · 4 copies · chains A
ACT · Acetate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	83	0.52	0.84	22	empty
2	89	0.49	0.82	20	empty
3	83	0.32	0.73	17	GOL

Compared structures

4UDN · structure of metal-free periplasmic metal binding protein from candidatus liberibacter… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C6XF58
Elsewhere: RCSB PDB 4UDN · PDBe 4UDN · UniProt C6XF58

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