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Crystal structure analysis of the dok-5 ptb domain

Analyse Crystal structure analysis of the dok-5 ptb domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1J0W
Type: protein
Length: 202 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Downstream of tyrosine kinase 5
EC: 2.7.1.112
UniProt: Q9P104

Structure

x-ray diffraction · 2 distinct chains · 19% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Downstream of tyrosine kinase 5 (EC 2.7.1.112)	protein	99	17% helix, 44% strand	Q9P104
B	Downstream of tyrosine kinase 5 (EC 2.7.1.112)	protein	103	21% helix, 42% strand	Q9P104

Interfaces

1 interface between chains.

A–B · 324 Å² buried · 5 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 4 modified (engineered).

Compared structures

1J0W · Crystal Structure Analysis of the Dok-5 PTB Domain · the same entry in another collection · chain A against A, TM-score 1.00
Q9P104 · AlphaFold monomer V2.0 prediction for docking protein 5 (Q9P104) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9P104
Elsewhere: RCSB PDB 1J0W · PDBe 1J0W · UniProt Q9P104

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