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Crystal structure of apo-cbby from rhodobacter sphaeroides

Analyse Crystal structure of apo-cbby from rhodobacter sphaeroides in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4UAR
Type: protein
Length: 225 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein cbby
UniProt: P95649
Pockets: 1 · best druggability 0.72

Structure

x-ray diffraction · 1 distinct chain · 49% helix, 12% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein cbby	protein	225	49% helix, 12% strand	P95649

Ligands and binding sites

GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	177	0.72	0.90	45	GOL

Compared structures

4UAR · Crystal structure of apo-CbbY from Rhodobacter sphaeroides · the same entry in another collection · chain A against A, TM-score 1.00
P95649 · AlphaFold monomer V2.0 prediction for protein cbby (P95649) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P95649
Elsewhere: RCSB PDB 4UAR · PDBe 4UAR · UniProt P95649

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