Research workbench

EUR_01830 with acarbose

Analyse EUR_01830 with acarbose in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4UAC
Type: protein
Length: 383 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Carbohydrate ABC transporter substrate-binding protein, CUT1 family (tc 3.A.1.1.-)
UniProt: D6E1Y1
Ligands: AC1, GLC
Pockets: 3 · best druggability 0.67

Structure

x-ray diffraction · 1 distinct chain · 48% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Carbohydrate ABC transporter substrate-binding protein, CUT1 family (tc 3.A.1.1.-)	protein	383	48% helix, 20% strand	D6E1Y1

Ligands and binding sites

AC1 · 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose · ligand · chains A
GLC · alpha-D-glucopyranose · sugar · 2 copies · chains A
EDO · 1,2-ethanediol · additive · 3 copies · chains A
PEG · Di(hydroxyethyl)ether · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	352	0.67	0.81	32	GLC, AC1
2	134	0.45	0.77	20	empty
3	57	0.30	0.75	15	EDO

Compared structures

4UAC · EUR_01830 with acarbose · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D6E1Y1
Elsewhere: RCSB PDB 4UAC · PDBe 4UAC · UniProt D6E1Y1

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