Research workbench
Structure of a membrane protein
Analyse Structure of a membrane protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4U9L
- Type
- protein
- Length
- 357 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Magnesium transporter mgte
- UniProt
- Q5SMG8
- Ligands
- MG
- Pockets
- 3 · best druggability 0.72
Structure
x-ray diffraction · 2 distinct chains · 88% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Magnesium transporter mgte | protein | 179 | 87% helix, 0% strand | Q5SMG8 |
| B | Magnesium transporter mgte | protein | 178 | 89% helix, 0% strand | Q5SMG8 |
Ligands and binding sites
- MG · Magnesium ion · metal · chains A, B
- OLC · (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · additive · 5 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 326 | 0.72 | 0.85 | 51 | MG |
| 2 | 67 | 0.32 | 0.75 | 17 | empty |
| 3 | 52 | 0.31 | 0.76 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 3025 Ų buried · 37 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SMG8
- Elsewhere: RCSB PDB 4U9L · PDBe 4U9L · UniProt Q5SMG8
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.