Research workbench
Crystal structure of salmonella alpha-2-macroglobulin
Analyse Crystal structure of salmonella alpha-2-macroglobulin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4U48
- Type
- protein
- Length
- 1,538 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative inner membrane lipoprotein
- UniProt
- Q8ZN46
- Pockets
- 18 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 14% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative inner membrane lipoprotein | protein | 1538 | 14% helix, 42% strand | Q8ZN46 |
Pockets
18 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 834 | 0.78 | 0.82 | 66 | empty |
| 2 | 809 | 0.75 | 0.79 | 84 | empty |
| 3 | 667 | 0.71 | 0.78 | 70 | empty |
| 4 | 96 | 0.68 | 0.92 | 24 | empty |
| 5 | 406 | 0.65 | 0.79 | 31 | empty |
Modifications
Observed in the structure: 22 modified (engineered).
Compared structures
- 4U48 · Crystal structure of Salmonella alpha-2-macroglobulin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8ZN46
- Elsewhere: RCSB PDB 4U48 · PDBe 4U48 · UniProt Q8ZN46
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