Research workbench
Crystal structure of the Y73E mutant of cytochrome C of class III (ambler) 26 kd
Analyse Crystal structure of the Y73E mutant of cytochrome C of class III (ambler) 26 kd in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1AQE
- Type
- protein
- Length
- 110 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome C3
- UniProt
- P38554
- Ligands
- HEM, SO4
- Pockets
- 1 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 30% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytochrome C3 | protein | 110 | 30% helix, 10% strand | P38554 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · 4 copies · chains A
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 626 | 0.77 | 0.83 | 66 | HEM |
Modifications
Observed in the structure: 8 cofactor (heme attachment).
Compared structures
- 1AQE · Crystal structure of the Y73E mutant of cytochrome C of class III (ambler) 26 kd · the same entry in another collection · chain A against A, TM-score 1.00
- P38554 · AlphaFold monomer V2.0 prediction for cytochrome C3, 26 kda (P38554) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P38554
- Elsewhere: RCSB PDB 1AQE · PDBe 1AQE · UniProt P38554
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