Research workbench
Ensemble refinement of the E502A variant of SACTELAM55A from streptomyces sp. sirexaa-E in complex with laminaritetraose
Analyse Ensemble refinement of the E502A variant of SACTELAM55A from streptomyces sp.… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4TZ3
- Type
- protein
- Length
- 549 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative secreted protein
- UniProt
- G2NFJ9
- Ligands
- BGC
- Pockets
- 4 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative secreted protein | protein | 549 | 6% helix, 44% strand | G2NFJ9 |
Ligands and binding sites
- BGC · beta-D-glucopyranose · sugar · 5 copies · chains A
- EDO · 1,2-ethanediol · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 67 | 0.74 | 0.99 | 27 | empty |
| 2 | 222 | 0.59 | 0.80 | 28 | BGC |
| 3 | 50 | 0.34 | 0.79 | 13 | empty |
| 4 | 51 | 0.31 | 0.77 | 19 | EDO |
Compared structures
- 4TZ3 · Ensemble refinement of the E502A variant of sacteLam55A from Streptomyces sp. SirexAA-E… · the same entry in another collection · chain A against A, TM-score 1.00
- G2NFJ9 · AlphaFold monomer V2.0 prediction for exo-beta-1,3-glucanase (G2NFJ9) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G2NFJ9
- Elsewhere: RCSB PDB 4TZ3 · PDBe 4TZ3 · UniProt G2NFJ9
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