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NMR structure ensemble of dff-C domain

Analyse NMR structure ensemble of dff-C domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1IYR
Type: protein
Length: 83 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA fragmentation factor alpha subunit
UniProt: O00273
Pockets: 1 · best druggability 0.41

Structure

solution nmr · 1 distinct chain · 54% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DNA fragmentation factor alpha subunit	protein	83	54% helix, 0% strand	O00273

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	124	0.41	0.75	21	empty

Compared structures

1IYR · NMR Structure Ensemble Of Dff-C Domain · the same entry in another collection · chain A against A, TM-score 1.00
O00273 · AlphaFold monomer V2.0 prediction for DNA fragmentation factor subunit alpha (O00273) · a predicted model of the same protein · chain A against A, TM-score 0.59

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O00273
Elsewhere: RCSB PDB 1IYR · PDBe 1IYR · UniProt O00273

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