Research workbench
X-ray crystal structure of a D-amino acid aminotransferase from burkholderia thailandensis E264 bound to the co-factor pyridoxal phosphate
Analyse X-ray crystal structure of a D-amino acid aminotransferase from burkholderia… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4TM5
- Type
- protein
- Length
- 296 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- D-amino acid aminotransferase
- UniProt
- Q2T1L0
- Pockets
- 3 · best druggability 0.39
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | D-amino acid aminotransferase | protein | 296 | 31% helix, 31% strand | Q2T1L0 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 113 | 0.39 | 0.75 | 22 | empty |
| 2 | 61 | 0.33 | 0.76 | 14 | empty |
| 3 | 51 | 0.28 | 0.75 | 12 | empty |
Modifications
Observed in the structure: 1 modified (cofactor).
Compared structures
- 4TM5 · X-ray crystal structure of a D-amino acid aminotransferase from Burkholderia… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2T1L0
- Elsewhere: RCSB PDB 4TM5 · PDBe 4TM5 · UniProt Q2T1L0
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.